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JDA
2008
122views more  JDA 2008»
13 years 7 months ago
An approximation algorithm for sorting by reversals and transpositions
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evolution. Analysis of genomes evolving by reversals and transpositions leads to a ...
Atif Rahman, Swakkhar Shatabda, Masud Hasan
JACM
2000
86views more  JACM 2000»
13 years 7 months ago
Periodification scheme: constructing sorting networks with constant period
We consider comparator networks M that are used repeatedly: while the output produced by M is not sorted, it is fed again into M. Sorting algorithms working in this way are called ...
Miroslaw Kutylowski, Krzysztof Lorys, Brigitte Oes...
IPL
2008
86views more  IPL 2008»
13 years 7 months ago
A more efficient algorithm for perfect sorting by reversals
We describe a new algorithm for the problem of perfect sorting a signed permutation by reversals. The worst-case time complexity of this algorithm is parameterized by the maximum p...
Sèverine Bérard, Cedric Chauve, Chri...
IPPS
2008
IEEE
14 years 1 months ago
Automatic generation of a parallel sorting algorithm
In this paper, we discuss a library generator for parallel sorting routines that examines the input characteristics (and the parameters they affect) to select the best performing ...
Brian A. Garber, Daniel Hoeflinger, Xiaoming Li, M...
ASPDAC
2006
ACM
129views Hardware» more  ASPDAC 2006»
14 years 1 months ago
Yield-area optimizations of digital circuits using non-dominated sorting genetic algorithm (YOGA)
With shrinking technology, the timing variation of a digital circuit is becoming the most important factor while designing a functionally reliable circuit. Gate sizing has emerged...
Vineet Agarwal, Janet Meiling Wang