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BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
FCCM
2006
IEEE
162views VLSI» more  FCCM 2006»
14 years 1 months ago
Power Visualization, Analysis, and Optimization Tools for FPGAs
This paper introduces the Low-Power Intelligent Tool Environment (LITE), an object oriented tool set designed for power visualization, analysis, and optimization. These tools lever...
Matthew French, Li Wang, Michael J. Wirthlin
WABI
2010
Springer
160views Bioinformatics» more  WABI 2010»
13 years 6 months ago
Genomic Distance with DCJ and Indels
The double cut and join (DCJ) operation, introduced by Yancopoulos, Attie and Friedberg in 2005, allows one to represent most rearrangement events in genomes. However, a DCJ cannot...
Marília D. V. Braga, Eyla Willing, Jens Sto...
GECCO
2006
Springer
332views Optimization» more  GECCO 2006»
13 years 11 months ago
Multi-objective PID-controller tuning for a magnetic levitation system using NSGA-II
This paper investigates the issue of PID-controller parameter tuning for a magnetic levitation system using the nondominated sorting genetic algorithm (NSGA-II). The magnetic levi...
Gerulf K. M. Pedersen, Zhenyu Yang
IPPS
1999
IEEE
13 years 12 months ago
Reducing I/O Complexity by Simulating Coarse Grained Parallel Algorithms
Block-wise access to data is a central theme in the design of efficient external memory (EM) algorithms. A second important issue, when more than one disk is present, is fully par...
Frank K. H. A. Dehne, David A. Hutchinson, Anil Ma...