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BIOCOMP
2006
13 years 9 months ago
Improving the Efficiency of Sorting by Reversals
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biology. In this paper we present an improved algorithm for sorting by reversals. Our...
Yijie Han
IPL
2008
86views more  IPL 2008»
13 years 7 months ago
A more efficient algorithm for perfect sorting by reversals
We describe a new algorithm for the problem of perfect sorting a signed permutation by reversals. The worst-case time complexity of this algorithm is parameterized by the maximum p...
Sèverine Bérard, Cedric Chauve, Chri...
ISAAC
2007
Springer
135views Algorithms» more  ISAAC 2007»
14 years 1 months ago
Fast Evaluation of Union-Intersection Expressions
Abstract. We show how to represent sets in a linear space data structure such that expressions involving unions and intersections of sets can be computed in a worst-case efficient ...
Philip Bille, Anna Pagh, Rasmus Pagh
PSIVT
2007
Springer
110views Multimedia» more  PSIVT 2007»
14 years 1 months ago
Measuring Linearity of Ordered Point Sets
It is often practical to measure how linear a certain ordered set of points is. We are interested in linearity measures which are invariant to rotation, scaling, and translation. T...
Milos Stojmenovic, Amiya Nayak
BMCBI
2007
174views more  BMCBI 2007»
13 years 7 months ago
Inferring activity changes of transcription factors by binding association with sorted expression profiles
Background: The identification of transcription factors (TFs) associated with a biological process is fundamental to understanding its regulatory mechanisms. From microarray data,...
Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M. Li