73 search results - page 1 / 15 » Sparsification of RNA Structure Prediction Including Pseudok... |
WABI
2010
Springer
13 years 9 months ago
2010
Springer
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
WABI
2010
Springer
13 years 9 months ago
2010
Springer
Abstract. We present three heuristic strategies for folding RNA sequences into secondary structures including kissing hairpin motifs. The new idea is to construct a kissing hairpin...
CANDC
2006
ACM
13 years 11 months ago
2006
ACM
On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
BIBE
2007
IEEE
14 years 5 months ago
2007
IEEE
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
WABI
2007
Springer
14 years 5 months ago
2007
Springer
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...