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IPPS
2006
IEEE
15 years 8 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
140
Voted
IV
2009
IEEE
128views Visualization» more  IV 2009»
15 years 9 months ago
Large Quasi-Tree Drawing: A Neighborhood Based Approach
In this paper, we present an algorithm to lay out a particular class of graphs coming from real case studies: the quasi-tree graph class. Protein and internet mappings projects ha...
Romain Bourqui, David Auber
ISNN
2004
Springer
15 years 7 months ago
A Novel Clustering Analysis Based on PCA and SOMs for Gene Expression Patterns
This paper proposes a novel clustering analysis algorithm based on principal component analysis (PCA) and self-organizing maps (SOMs) for clustering the gene expression patterns. T...
Hong-Qiang Wang, De-Shuang Huang, Xing-Ming Zhao, ...
129
Voted
TVCG
2011
274views more  TVCG 2011»
14 years 9 months ago
Memory-Scalable GPU Spatial Hierarchy Construction
We present two novel algorithms for constructing spatial hierarchies on GPUs. The first is for kd-trees that automatically balances between the level of parallelism and total mem...
Qiming Hou, Xin Sun, Kun Zhou, Christian Lauterbac...
92
Voted
CLUSTER
2007
IEEE
15 years 8 months ago
Network performance model for TCP/IP based cluster computing
— A new communication model, called the PlogPT model, is proposed to predict communication performance in a commodity cluster where computing nodes communicate using TCP/IP. This...
Akihiro Nomura, Hiroya Matsuba, Yutaka Ishikawa