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» Spatio-Temporal Alignment of Sequences
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ICASSP
2008
IEEE
14 years 3 months ago
Fusion of cleavage site detection and pairwise alignment for fast subcellular localization
In recent years, homology-based and signal-based methods have been proposed for predicting the subcellular localization of proteins. While it has been known that homology-based me...
Man-Wai Mak, Sun-Yuan Kung
AVSS
2006
IEEE
14 years 3 months ago
A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition
In this paper we address the spatial activity recognition problem with an algorithm based on Smith-Waterman (SW) local alignment. The proposed SW approach utilises dynamic program...
Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
BMCBI
2004
102views more  BMCBI 2004»
13 years 9 months ago
FRAGS: estimation of coding sequence substitution rates from fragmentary data
Background: Rates of substitution in protein-coding sequences can provide important insights into evolutionary processes that are of biomedical and theoretical interest. Increased...
Estienne C. Swart, Winston A. Hide, Cathal Seoighe
COLING
2008
13 years 10 months ago
A Local Alignment Kernel in the Context of NLP
This paper discusses local alignment kernels in the context of the relation extraction task. We define a local alignment kernel based on the Smith-Waterman measure as a sequence s...
Sophia Katrenko, Pieter W. Adriaans