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» Spatio-Temporal Alignment of Sequences
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BMCBI
2005
73views more  BMCBI 2005»
13 years 9 months ago
Empirical codon substitution matrix
Background: Codon substitution probabilities are used in many types of molecular evolution studies such as determining Ka/Ks ratios, creating ancestral DNA sequences or aligning c...
Adrian Schneider, Gina Cannarozzi, Gaston H. Gonne...
CF
2008
ACM
13 years 11 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...
IDEAS
1997
IEEE
237views Database» more  IDEAS 1997»
14 years 1 months ago
Sequence Comparison Using a Relational Database Approach
A variety of heterogenous data sources is available in the field of molecular biology. Our focus lies on the biological sequence data, i. e. data maintained in collections like EM...
André Bergholz, Stephan Heymann, Jörg ...
NAR
2006
107views more  NAR 2006»
13 years 9 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
NAR
2000
123views more  NAR 2000»
13 years 9 months ago
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
The AMmtDB database (http://bio-www.ba.cnr.it:8000/ srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNA...
Cecilia Lanave, Sabino Liuni, Flavio Licciulli, Ma...