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» Spatio-Temporal Alignment of Sequences
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WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
14 years 1 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
GCB
2001
Springer
111views Biometrics» more  GCB 2001»
14 years 6 days ago
Approximate Bayesian Discrimination between Alternative DNA Mosaic Structures
: We derive an approximate Bayesian hypothesis test to discriminate between alternative mosaic structures of DNA sequence alignments, and test the viability of this approach on a s...
Dirk Husmeier, Frank Wright
BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Background: Multiple sequence alignments are a fundamental tool for the comparative analysis of proteins and nucleic acids. However, large data sets are no longer manageable for v...
Alberto I. Roca, Albert E. Almada, Aaron C. Abajia...
RECOMB
2006
Springer
14 years 8 months ago
CONTRAlign: Discriminative Training for Protein Sequence Alignment
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
CANDC
2005
ACM
13 years 7 months ago
MSAID: multiple sequence alignment based on a measure of information discrepancy
We propose an algorithm of global multiple sequence alignment that is based on a measure of what we call information discrepancy. The algorithm follows a progressive alignment ite...
Min Zhang, Weiwu Fang, Junhua Zhang, Zhongxian Chi