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» Spatio-Temporal Alignment of Sequences
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ICB
2009
Springer
255views Biometrics» more  ICB 2009»
13 years 6 months ago
Automatic Partial Face Alignment in NIR Video Sequences
Face recognition with partial face images is an important problem in face biometrics. The necessity can arise in not so constrained environments such as in surveillance video, or p...
Jimei Yang, ShengCai Liao, Stan Z. Li
ALMOB
2008
85views more  ALMOB 2008»
13 years 9 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
AAAI
2000
13 years 10 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang
IJBRA
2006
111views more  IJBRA 2006»
13 years 9 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
BMCBI
2008
211views more  BMCBI 2008»
13 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle