Sciweavers

1112 search results - page 86 / 223
» Spatio-Temporal Alignment of Sequences
Sort
View
IPPS
2008
IEEE
14 years 3 months ago
SWAMP: Smith-Waterman using associative massive parallelism
One of the most commonly used tools by computational biologists is some form of sequence alignment. Heuristic alignment algorithms developed for speed and their multiple results s...
Shannon Steinfadt, Johnnie W. Baker
NAR
2006
119views more  NAR 2006»
13 years 9 months ago
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
Johannes Söding, Michael Remmert, Andreas Bie...
BMCBI
2007
152views more  BMCBI 2007»
13 years 9 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
BMCBI
2006
120views more  BMCBI 2006»
13 years 9 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
ACL
2003
13 years 10 months ago
Word Sense Disambiguation Using Pairwise Alignment
In this paper, we proposed a new supervised word sense disambiguation (WSD) method based on a pairwise alignment technique, which is used generally to measure a similarity between...
Koichi Yamashita, Keiichi Yoshida, Yukihiro Itoh