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» Spatio-Temporal Alignment of Sequences
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NAR
2006
134views more  NAR 2006»
13 years 9 months ago
The MPI Bioinformatics Toolkit for protein sequence analysis
The MPI Bioinformatics Toolkit is an interactive web service which offers access to a great variety of public and in-house bioinformatics tools. They are grouped into different se...
Andreas Biegert, Christian Mayer, Michael Remmert,...
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
BMCBI
2007
233views more  BMCBI 2007»
13 years 9 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
ICPR
2006
IEEE
14 years 10 months ago
Change detection in streetscapes from GPS coordinated omni-directional image sequences
As part of ITS technology, to achieve quick map updates, we propose a method for automatically detecting changes in streetscapes from images captured by car-mounted omnidirectiona...
Hiroshi Murase, Ichiro Ide, Junji Sato, Tomokazu T...
LATA
2010
Springer
14 years 2 months ago
A Randomized Numerical Aligner (rNA)
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...
Alberto Policriti, Alexandru I. Tomescu, Francesco...