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» Spatio-Temporal Alignment of Sequences
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RECOMB
2006
Springer
14 years 9 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
IBPRIA
2003
Springer
14 years 2 months ago
Combining Phrase-Based and Template-Based Alignment Models in Statistical Translation
In statistical machine translation, single-word based models have an important deficiency; they do not take contextual information into account for the translation decision. A poss...
Jesús Tomás, Francisco Casacuberta
BIOCOMP
2006
13 years 10 months ago
TALI: Protein Structure Alignment Using Backbone Torsion Angles
- This article introduces a novel protein structure alignment method (named TALI) based on protein backbone torsion angle instead of the more traditional distance matrix. Represent...
Xijiang Miao, Michael Bryson, Homayoun Valafar
BMCBI
2006
159views more  BMCBI 2006»
13 years 9 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
NAR
2008
101views more  NAR 2008»
13 years 7 months ago
RNALogo: a new approach to display structural RNA alignment
Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang