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» Spatio-Temporal Alignment of Sequences
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RECOMB
2006
Springer
14 years 9 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
ACL
2006
13 years 10 months ago
A Bio-Inspired Approach for Multi-Word Expression Extraction
This paper proposes a new approach for Multi-word Expression (MWE)extraction on the motivation of gene sequence alignment because textual sequence is similar to gene sequence in p...
Jianyong Duan, Ruzhan Lu, Weilin Wu, Yi Hu, Yan Ti...
BMCBI
2006
165views more  BMCBI 2006»
13 years 9 months ago
Improving the quality of protein structure models by selecting from alignment alternatives
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...
BMCBI
2011
13 years 22 days ago
Improving pan-genome annotation using whole genome multiple alignment
Background: Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations c...
Samuel V. Angiuoli, Julie C. Dunning Hotopp, Steve...
WCRE
2010
IEEE
13 years 7 months ago
Extracting Sequence Diagrams from Execution Traces Using Interactive Visualization
—We present a semi-automated approach for the reverse engineering of UML sequence diagrams. Our approach starts with a set of execution traces that are automatically aligned in o...
Hassen Grati, Houari A. Sahraoui, Pierre Poulin