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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
ICALP
2010
Springer
13 years 9 months ago
Resource Oblivious Sorting on Multicores
We present a new deterministic sorting algorithm that interleaves the partitioning of a sample sort with merging. Sequentially, it sorts n elements in O(n log n) time cache-oblivi...
Richard Cole, Vijaya Ramachandran
IPPS
2009
IEEE
14 years 2 months ago
Designing multi-leader-based Allgather algorithms for multi-core clusters
The increasing demand for computational cycles is being met by the use of multi-core processors. Having large number of cores per node necessitates multi-core aware designs to ext...
Krishna Chaitanya Kandalla, Hari Subramoni, Gopala...
SPAA
2009
ACM
14 years 8 months ago
Brief announcement: selfishness in transactional memory
In order to be efficient with selfish programmers, a multicore transactional memory (TM) system must be designed such that it is compatible with good programming incentives (GPI),...
Raphael Eidenbenz, Roger Wattenhofer
IISWC
2009
IEEE
14 years 2 months ago
Phoenix rebirth: Scalable MapReduce on a large-scale shared-memory system
Abstract—Dynamic runtimes can simplify parallel programming by automatically managing concurrency and locality without further burdening the programmer. Nevertheless, implementin...
Richard M. Yoo, Anthony Romano, Christos Kozyrakis