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    SSDBM
    2010
    IEEE
    220views Database» more  SSDBM 2010»
    Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
    14 years 7 days ago
    Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
    Download  www.informatik.hu-berlin.de
    Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
    Astrid Rheinländer, Martin Knobloch, Nicky Ho...
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    JCB
    2006
    124views more  JCB 2006»
    The Average Common Substring Approach to Phylogenomic Reconstruction
    13 years 7 months ago
    The Average Common Substring Approach to Phylogenomic Reconstruction
    Download  www.cs.tau.ac.il
    We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
    Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
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    BMCBI
    2010
    193views more  BMCBI 2010»
    Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
    13 years 8 months ago
    Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
    Download  www.biomedcentral.com
    Background: Affymetrix GeneChip microarrays are popular platforms for expression profiling in two types of studies: detection of differential expression computed by p-values of t-...
    Jakub Mieczkowski, Magdalena E. Tyburczy, Michal D...
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    BMCBI
    2008
    163views more  BMCBI 2008»
    Gene Ontology term overlap as a measure of gene functional similarity
    13 years 8 months ago
    Gene Ontology term overlap as a measure of gene functional similarity
    Download  www.biomedcentral.com
    Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
    Meeta Mistry, Paul Pavlidis
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    BMCBI
    2007
    128views more  BMCBI 2007»
    Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
    13 years 8 months ago
    Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
    Download  www.biomedcentral.com
    Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
    Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
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