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» Statistical analysis of domains in interacting protein pairs
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TVCG
2012
184views Hardware» more  TVCG 2012»
11 years 9 months ago
Output-Sensitive Construction of Reeb Graphs
—The Reeb graph of a scalar function represents the evolution of the topology of its level sets. This paper describes a near-optimal output-sensitive algorithm for computing the ...
Harish Doraiswamy, Vijay Natarajan
FM
2009
Springer
138views Formal Methods» more  FM 2009»
14 years 1 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
BMCBI
2006
139views more  BMCBI 2006»
13 years 7 months ago
Integrated functional visualization of eukaryotic genomes
Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
Rohit Ghai, Hannes Lindemann, Trinad Chakraborty
BMCBI
2007
154views more  BMCBI 2007»
13 years 7 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
SEMWEB
2005
Springer
14 years 13 days ago
RelExt: A Tool for Relation Extraction from Text in Ontology Extension
Abstract. Domain ontologies very rarely model verbs as relations holding between concepts. However, the role of the verb as a central connecting element between concepts is undenia...
Alexander Schutz, Paul Buitelaar