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    BMCBI
    2006
    139views more  BMCBI 2006»
    Integrated functional visualization of eukaryotic genomes
    13 years 8 months ago
    Integrated functional visualization of eukaryotic genomes
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    Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
    Rohit Ghai, Hannes Lindemann, Trinad Chakraborty
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    BMCBI
    2006
    128views more  BMCBI 2006»
    Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
    13 years 8 months ago
    Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
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    Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
    Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
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    BMCBI
    2007
    163views more  BMCBI 2007»
    Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approac
    13 years 8 months ago
    Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approac
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    Background: Microarrays are widely used for the study of gene expression; however deciding on whether observed differences in expression are significant remains a challenge. Resul...
    Carmen Pin, Mark Reuter
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    BMCBI
    2007
    106views more  BMCBI 2007»
    Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive as
    13 years 8 months ago
    Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive as
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    Background: A widely-used approach for discovering functional and physical interactions among proteins involves phylogenetic profile comparisons (PPCs). Here, proteins with simila...
    Raja Jothi, Teresa M. Przytycka, L. Aravind
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    BMCBI
    2007
    101views more  BMCBI 2007»
    Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
    13 years 8 months ago
    Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
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    Background: Pyrrolizidine alkaloids (PAs) are probably the most common plant constituents that poison livestock, wildlife, and humans worldwide. Riddelliine is isolated from plant...
    Nan Mei, Lei Guo, Ruqing Liu, James C. Fuscoe, Tao...
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