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IPPS
2009
IEEE
14 years 3 months ago
Long time-scale simulations of in vivo diffusion using GPU hardware
To address the problem of performing long time simulations of biochemical pathways under in vivo cellular conditions, we have developed a lattice-based, reaction-diffusion model t...
Elijah Roberts, John E. Stone, Leonardo Sepulveda,...
SC
2003
ACM
14 years 2 months ago
Dyn-MPI: Supporting MPI on Non Dedicated Clusters
Distributing data is a fundamental problem in implementing efficient distributed-memory parallel programs. The problem becomes more difficult in environments where the participa...
D. Brent Weatherly, David K. Lowenthal, Mario Naka...
PPOPP
1999
ACM
14 years 1 months ago
MagPIe: MPI's Collective Communication Operations for Clustered Wide Area Systems
Writing parallel applications for computational grids is a challenging task. To achieve good performance, algorithms designed for local area networks must be adapted to the differ...
Thilo Kielmann, Rutger F. H. Hofman, Henri E. Bal,...
ICDCS
1998
IEEE
14 years 1 months ago
LBF: A Performance Metric for Program Reorganization
We introduce a new performance metric, called Load Balancing Factor (LBF), to assist programmers with evaluating different tuning alternatives. The LBF metric differs from traditi...
Hyeonsang Eom, Jeffrey K. Hollingsworth
CCGRID
2010
IEEE
13 years 10 months ago
Streamflow Programming Model for Data Streaming in Scientific Workflows
Geo-sciences involve large-scale parallel models, high resolution real time data from highly asynchronous and heterogeneous sensor networks and instruments, and complex analysis a...
Chathura Herath, Beth Plale