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ICML
2009
IEEE
14 years 8 months ago
Geometry-aware metric learning
In this paper, we introduce a generic framework for semi-supervised kernel learning. Given pairwise (dis-)similarity constraints, we learn a kernel matrix over the data that respe...
Zhengdong Lu, Prateek Jain, Inderjit S. Dhillon
ECCB
2005
IEEE
14 years 1 months ago
SIMAP - The similarity matrix of proteins
Similarity Matrix of Proteins (SIMAP) (http://mips.gsf. 10 de/simap) provides a database based on a precomputed similarity matrix covering the similarity space formed by .4 millio...
Roland Arnold, Thomas Rattei, Patrick Tischler, Mi...
APPT
2007
Springer
13 years 9 months ago
A Parallel BSP Algorithm for Irregular Dynamic Programming
Dynamic programming is a widely applied algorithm design technique in many areas such as computational biology and scientific computing. Typical applications using this technique a...
Malcolm Yoke-Hean Low, Weiguo Liu, Bertil Schmidt
BIOCOMP
2007
13 years 9 months ago
Towards Phylogenomic Reconstruction
Reconstructing phylogenies is one of the primary objectives in evolution studies. Efficient software to reconstruct phylogenies based on isolated genes has existed for decades, ye...
Le Vinh, Andres Varon, Daniel Janies, Ward Wheeler
METMBS
2004
140views Mathematics» more  METMBS 2004»
13 years 9 months ago
New Techniques for Generation and Analysis of Evolutionary Trees
We introduce new distance measures for the construction and analysis of phylogenies, focusing on thioredoxin-fold proteins. Our distance measures for tree construction are based o...
Chang Wang, Stephen D. Scott, Qingping Tao, Dmitri...