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» String Distances and Uniformities
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FOCS
2005
IEEE
14 years 1 months ago
The Closest Substring problem with small distances
In the CLOSEST SUBSTRING problem k strings s1, ..., sk are given, and the task is to find a string s of length L such that each string si has a consecutive substring of length L ...
Dániel Marx
SODA
2010
ACM
181views Algorithms» more  SODA 2010»
13 years 5 months ago
Near-Optimal Sublinear Time Algorithms for Ulam Distance
We give near-tight bounds for estimating the edit distance between two non-repetitive strings (Ulam distance) with constant approximation, in sub-linear time. For two strings of l...
Alexandr Andoni, Huy L. Nguyen
DIS
2004
Springer
14 years 23 days ago
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance
We consider the problem of discovering the optimal pair of substring patterns with bounded distance α, from a given set S of strings. We study two kinds of pattern classes, one is...
Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö,...
ISAAC
2003
Springer
133views Algorithms» more  ISAAC 2003»
14 years 17 days ago
The Intractability of Computing the Hamming Distance
Given a string x and a language L, the Hamming distance of x to L is the minimum Hamming distance of x to any string in L. The edit distance of a string to a language is analogous...
Bodo Manthey, Rüdiger Reischuk
CPM
2007
Springer
73views Combinatorics» more  CPM 2007»
13 years 11 months ago
Move-to-Front, Distance Coding, and Inversion Frequencies Revisited
Move-to-Front, Distance Coding and Inversion Frequencies are three simple and effective techniques used to process the output of the Burrows-Wheeler Transform. In this paper we pr...
Travis Gagie, Giovanni Manzini