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IPPS
2008
IEEE
14 years 2 months ago
High-speed string searching against large dictionaries on the Cell/B.E. Processor
Our digital universe is growing, creating exploding amounts of data which need to be searched, protected and filtered. String searching is at the core of the tools we use to curb...
Daniele Paolo Scarpazza, Oreste Villa, Fabrizio Pe...
SODA
2010
ACM
213views Algorithms» more  SODA 2010»
14 years 5 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
SIGIR
2011
ACM
12 years 10 months ago
Inverted indexes for phrases and strings
Inverted indexes are the most fundamental and widely used data structures in information retrieval. For each unique word occurring in a document collection, the inverted index sto...
Manish Patil, Sharma V. Thankachan, Rahul Shah, Wi...
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 12 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik