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TCBB
2008
103views more  TCBB 2008»
13 years 8 months ago
DNA Motif Representation with Nucleotide Dependency
The problem of discovering novel motifs of binding sites is important to the understanding of gene regulatory networks. Motifs are generally represented by matrices (PWM or PSSM) o...
Francis Y. L. Chin, Henry C. M. Leung
KDD
2002
ACM
115views Data Mining» more  KDD 2002»
14 years 9 months ago
Collaborative crawling: mining user experiences for topical resource discovery
The rapid growth of the world wide web had made the problem of topic speci c resource discovery an important one in recent years. In this problem, it is desired to nd web pages wh...
Charu C. Aggarwal
BMCBI
2007
190views more  BMCBI 2007»
13 years 9 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
FLAIRS
2010
13 years 11 months ago
Handling of Numeric Ranges for Graph-Based Knowledge Discovery
Nowadays, graph-based knowledge discovery algorithms do not consider numeric attributes (they are discarded in the preprocessing step, or they are treated as alphanumeric values w...
Oscar E. Romero, Jesus A. Gonzalez, Lawrence B. Ho...
BMCBI
2006
113views more  BMCBI 2006»
13 years 9 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida