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» Structural Protein Interactions: From Months to Minutes
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IJBRA
2008
97views more  IJBRA 2008»
13 years 8 months ago
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
: A major challenge in text mining for biomedicine is automatically extracting protein-protein interactions from the vast amount of biomedical literature. We have constructed an in...
Deyu Zhou, Yulan He, Chee Keong Kwoh
BIRD
2007
Springer
107views Bioinformatics» more  BIRD 2007»
14 years 2 months ago
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models
The coiled-coil protein domain is a widespread structural motif known to be involved in a wealth of key interactions in cells and organisms. Coiled-coil recognition and prediction ...
Piero Fariselli, Daniele Molinini, Rita Casadio, A...
BMCBI
2004
174views more  BMCBI 2004»
13 years 8 months ago
Implications for domain fusion protein-protein interactions based on structural information
Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
Jer-Ming Chia, Prasanna R. Kolatkar
COLING
2010
13 years 3 months ago
Dependency-Driven Feature-based Learning for Extracting Protein-Protein Interactions from Biomedical Text
Recent kernel-based PPI extraction systems achieve promising performance because of their capability to capture structural syntactic information, but at the expense of computation...
Bing Liu, Longhua Qian, Hongling Wang, Guodong Zho...
BMCBI
2007
107views more  BMCBI 2007»
13 years 8 months ago
Reuse of structural domain-domain interactions in protein networks
Background: Protein interactions are thought to be largely mediated by interactions between structural domains. Databases such as iPfam relate interactions in protein structures t...
Benjamin Schuster-Böckler, Alex Bateman