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ACL
2006
13 years 10 months ago
Mildly Non-Projective Dependency Structures
We present parsing algorithms for various mildly non-projective dependency formalisms. In particular, algorithms are presented for: all well-nested structures of gap degree at mos...
Marco Kuhlmann, Joakim Nivre
CONCUR
2003
Springer
14 years 1 months ago
Bundle Event Structures and CCSP
We investigate which event structures can be denoted by means of closed CCS ∪ CSP expressions. Working up to isomorphism we find that • all denotable event structures are bund...
Rob J. van Glabbeek, Frits W. Vaandrager
BMCBI
2007
100views more  BMCBI 2007»
13 years 8 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
BMCBI
2008
87views more  BMCBI 2008»
13 years 8 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
14 years 12 days ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya