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» Structure recognition on sequences with a neuro-fuzzy-system
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BMCBI
2007
144views more  BMCBI 2007»
13 years 8 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
BMCBI
2007
142views more  BMCBI 2007»
13 years 8 months ago
Improving model construction of profile HMMs for remote homology detection through structural alignment
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Juliana S. Bernardes, Alberto M. R. Dávila,...
RECOMB
2001
Springer
14 years 9 months ago
Predicting the beta-helix fold from protein sequence data
A method is presented that uses b-strand interactions to predict the parallel right-handed b-helix super-secondary structural motif in protein sequences. A program called BetaWrap...
Phil Bradley, Lenore Cowen, Matthew Menke, Jonatha...
PR
2006
110views more  PR 2006»
13 years 8 months ago
Classifying protein sequences using hydropathy blocks
The annotation of proteins can be achieved by classifying the protein of interest into a certain known protein family to induce its functional and structural features. This paper ...
De-Shuang Huang, Xing-Ming Zhao, Guang-Bin Huang, ...
ACL
2009
13 years 6 months ago
Semi-Supervised Active Learning for Sequence Labeling
While Active Learning (AL) has already been shown to markedly reduce the annotation efforts for many sequence labeling tasks compared to random selection, AL remains unconcerned a...
Katrin Tomanek, Udo Hahn