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GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 2 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
BMCBI
2005
198views more  BMCBI 2005»
13 years 8 months ago
Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
ICML
2003
IEEE
14 years 9 months ago
Finding Underlying Connections: A Fast Graph-Based Method for Link Analysis and Collaboration Queries
Many techniques in the social sciences and graph theory deal with the problem of examining and analyzing patterns found in the underlying structure and associations of a group of ...
Jeremy Kubica, Andrew W. Moore, David Cohn, Jeff G...
NIPS
2008
13 years 10 months ago
Learning the Semantic Correlation: An Alternative Way to Gain from Unlabeled Text
In this paper, we address the question of what kind of knowledge is generally transferable from unlabeled text. We suggest and analyze the semantic correlation of words as a gener...
Yi Zhang 0010, Jeff Schneider, Artur Dubrawski
BMCBI
2007
164views more  BMCBI 2007»
13 years 8 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason