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» Structured Weight-Based Prediction Algorithms
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BMCBI
2011
13 years 2 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
ICASSP
2011
IEEE
12 years 11 months ago
Epileptic seizure prediction using the spatiotemporal correlation structure of intracranial EEG
A patient-specific seizure prediction algorithm is proposed that extracts novel multivariate signal coherence features from ECoG recordings and classifies a patient’s pre-seiz...
James R. Williamson, Daniel W. Bliss, David W. Bro...
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
14 years 2 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models
Background: The accuracy of protein secondary structure prediction has been improving steadily towards the 88% estimated theoretical limit. There are two types of prediction algor...
Zafer Aydin, Yucel Altunbasak, Mark Borodovsky
ICASSP
2008
IEEE
14 years 2 months ago
A new Particle Filtering algorithm with structurally optimal importance function
Bayesian estimation in nonlinear stochastic dynamical systems has been addressed for a long time. Among other solutions, Particle Filtering (PF) algorithms propagate in time a Mon...
Boujemaa Ait-El-Fquih, François Desbouvries