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IPPS
2007
IEEE
14 years 3 months ago
Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture
We present a study of multithreaded implementations of Thorup’s algorithm for solving the Single Source Shortest Path (SSSP) problem for undirected graphs. Our implementations l...
Joseph R. Crobak, Jonathan W. Berry, Kamesh Maddur...
JBCB
2006
60views more  JBCB 2006»
13 years 9 months ago
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...
Anantharaman Kalyanaraman, Srinivas Aluru
CVPR
2003
IEEE
14 years 11 months ago
Computing Layered Surface Representations: An Algorithm for Detecting and Separating Transparent Overlays
The biological visual system possesses the ability to compute layered surface representations, in which one surface is represented as being viewed through another. This ability is...
Manish Singh, Xiaolei Huang
TIT
2010
170views Education» more  TIT 2010»
13 years 3 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...
NIPS
2008
13 years 10 months ago
Partially Observed Maximum Entropy Discrimination Markov Networks
Learning graphical models with hidden variables can offer semantic insights to complex data and lead to salient structured predictors without relying on expensive, sometime unatta...
Jun Zhu, Eric P. Xing, Bo Zhang