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» Studies in Solution Sampling
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BMCBI
2007
144views more  BMCBI 2007»
13 years 10 months ago
Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data
Background: In practice many biological time series measurements, including gene microarrays, are conducted at time points that seem to be interesting in the biologist's opin...
Miika Ahdesmäki, Harri Lähdesmäki, ...
BMCBI
2006
149views more  BMCBI 2006»
13 years 10 months ago
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteri
Background: Accurate interpretation of data obtained by unsupervised analysis of large scale expression profiling studies is currently frequently performed by visually combining s...
Roel G. W. Verhaak, Mathijs A. Sanders, Maarten A....
SIGMETRICS
2008
ACM
115views Hardware» more  SIGMETRICS 2008»
13 years 10 months ago
Densification arising from sampling fixed graphs
During the past decade, a number of different studies have identified several peculiar properties of networks that arise from a diverse universe, ranging from social to computer n...
Pedram Pedarsani, Daniel R. Figueiredo, Matthias G...
BMCBI
2005
114views more  BMCBI 2005»
13 years 10 months ago
Signal transduction pathway profiling of individual tumor samples
Background: Signal transduction pathways convey information from the outside of the cell to transcription factors, which in turn regulate gene expression. Our objective is to anal...
Thomas Breslin, Morten Krogh, Carsten Peterson, Ca...
IMC
2009
ACM
14 years 4 months ago
Sampling biases in network path measurements and what to do about it
We show that currently prevalent practices for network path measurements can produce inaccurate inferences because of sampling biases. The inferred mean path latency can be more t...
Srikanth Kandula, Ratul Mahajan