Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
A very challenging issue for optimizing compilers is the phase ordering problem: In what order should a collection of compiler optimizations be performed? We address this problem ...
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...
Conventional wisdom suggests that O(k)-time is required to reverse a substring of length k. To reduce this time complexity, a simple and unorthodox data structure is introduced. A ...
We consider the problem of permutation reconstruction, which is a variant of graph reconstruction. Given a permutation p of length n, we delete k of its entries in each possible w...