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» Switch Detection in Genetic Regulatory Networks
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GLVLSI
2003
IEEE
175views VLSI» more  GLVLSI 2003»
14 years 4 days ago
A custom FPGA for the simulation of gene regulatory networks
We present a unique FPGA that uses a mix of digital and large-signal analog computation for the simulation of gene regulatory networks. The prototype IC consists of a 4x5 array of...
Ilias Tagkopoulos, Charles A. Zukowski, German Cav...
BMCBI
2005
126views more  BMCBI 2005»
13 years 6 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
BMCBI
2006
202views more  BMCBI 2006»
13 years 7 months ago
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Background: The learning of global genetic regulatory networks from expression data is a severely under-constrained problem that is aided by reducing the dimensionality of the sea...
David J. Reiss, Nitin S. Baliga, Richard Bonneau
BMCBI
2008
135views more  BMCBI 2008»
13 years 7 months ago
Inferring the role of transcription factors in regulatory networks
Background: Expression profiles obtained from multiple perturbation experiments are increasingly used to reconstruct transcriptional regulatory networks, from well studied, simple...
Philippe Veber, Carito Guziolowski, Michel Le Borg...
ARCS
2005
Springer
14 years 12 days ago
Organic Architectures for Large-Scale Environment-Aware Sensor Networks
This paper examines how methods inspired by biological processes can be applied to the design of large-scale environment-aware sensor networks. Our ultimate goal are systems conta...
Paul Lukowicz, Erhardt Barth, Jan T. Kim