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» Switching Graphs and Their Complexity
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STOC
2009
ACM
139views Algorithms» more  STOC 2009»
14 years 10 months ago
Online and stochastic survivable network design
Consider the edge-connectivity survivable network design problem: given a graph G = (V, E) with edge-costs, and edgeconnectivity requirements rij Z0 for every pair of vertices i,...
Anupam Gupta, Ravishankar Krishnaswamy, R. Ravi
RECOMB
2006
Springer
14 years 10 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
RECOMB
2006
Springer
14 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2005
Springer
14 years 10 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
STOC
2007
ACM
239views Algorithms» more  STOC 2007»
14 years 10 months ago
Approximating minimum bounded degree spanning trees to within one of optimal
In the MINIMUM BOUNDED DEGREE SPANNING TREE problem, we are given an undirected graph with a degree upper bound Bv on each vertex v, and the task is to find a spanning tree of min...
Mohit Singh, Lap Chi Lau