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» Switching Graphs and Their Complexity
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STOC
2009
ACM
139views Algorithms» more  STOC 2009»
16 years 3 months ago
Online and stochastic survivable network design
Consider the edge-connectivity survivable network design problem: given a graph G = (V, E) with edge-costs, and edgeconnectivity requirements rij Z0 for every pair of vertices i,...
Anupam Gupta, Ravishankar Krishnaswamy, R. Ravi
RECOMB
2006
Springer
16 years 3 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
RECOMB
2006
Springer
16 years 3 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2005
Springer
16 years 3 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
STOC
2007
ACM
239views Algorithms» more  STOC 2007»
16 years 3 months ago
Approximating minimum bounded degree spanning trees to within one of optimal
In the MINIMUM BOUNDED DEGREE SPANNING TREE problem, we are given an undirected graph with a degree upper bound Bv on each vertex v, and the task is to find a spanning tree of min...
Mohit Singh, Lap Chi Lau