Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...
We consider the task of learning mappings from sequential data to real-valued responses. We present and evaluate an approach to learning a type of hidden Markov model (HMM) for re...
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Many biological propositions can be supported by a variety of different types of evidence. It is often useful to collect together large numbers of such propositions, together with...
Philip M. Long, Vinay Varadan, Sarah Gilman, Mark ...
Studying metabolic fluxes is a crucial aspect of understanding biological phenotypes. However, it is often not possible to measure these fluxes directly. As an alternative, fluxom...