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DAC
2011
ACM
12 years 6 months ago
Synchronous sequential computation with molecular reactions
Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...
Hua Jiang, Marc D. Riedel, Keshab K. Parhi
UAI
2008
13 years 8 months ago
Learning Hidden Markov Models for Regression using Path Aggregation
We consider the task of learning mappings from sequential data to real-valued responses. We present and evaluate an approach to learning a type of hidden Markov model (HMM) for re...
Keith Noto, Mark Craven
RECOMB
2010
Springer
13 years 5 months ago
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Aïda Ouangraoua, Krister M. Swenson, Cedric C...
ICML
2005
IEEE
14 years 7 months ago
Unsupervised evidence integration
Many biological propositions can be supported by a variety of different types of evidence. It is often useful to collect together large numbers of such propositions, together with...
Philip M. Long, Vinay Varadan, Sarah Gilman, Mark ...
GECCO
2007
Springer
159views Optimization» more  GECCO 2007»
13 years 10 months ago
Discrimination of metabolic flux profiles using a hybrid evolutionary algorithm
Studying metabolic fluxes is a crucial aspect of understanding biological phenotypes. However, it is often not possible to measure these fluxes directly. As an alternative, fluxom...
Stefan Bleuler, Eckart Zitzler