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13 years 9 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
ACSC
2005
IEEE
14 years 1 months ago
Integer Programming Models and Algorithms for Molecular Classification of Cancer from Microarray Data
Novel, high-throughput technologies are challenging the core of algorithmic methods available in Computer Science. Microarray technologies give Life Sciences researchers the oppor...
Regina Berretta, Alexandre Mendes, Pablo Moscato
KDD
2008
ACM
206views Data Mining» more  KDD 2008»
14 years 8 months ago
Identifying biologically relevant genes via multiple heterogeneous data sources
Selection of genes that are differentially expressed and critical to a particular biological process has been a major challenge in post-array analysis. Recent development in bioin...
Zheng Zhao, Jiangxin Wang, Huan Liu, Jieping Ye, Y...
CORR
2008
Springer
113views Education» more  CORR 2008»
13 years 7 months ago
Document stream clustering: experimenting an incremental algorithm and AR-based tools for highlighting dynamic trends
We address here two major challenges presented by dynamic data mining: 1) the stability challenge: we have implemented a rigorous incremental density-based clustering algorithm, i...
Alain Lelu, Martine Cadot, Pascal Cuxac
KDD
2005
ACM
125views Data Mining» more  KDD 2005»
14 years 8 months ago
Email data cleaning
Addressed in this paper is the issue of `email data cleaning' for text mining. Many text mining applications need take emails as input. Email data is usually noisy and thus i...
Jie Tang, Hang Li, Yunbo Cao, ZhaoHui Tang