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» Techniques for obtaining high performance in Java programs
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DILS
2005
Springer
14 years 2 months ago
PLATCOM: Current Status and Plan for the Next Stages
We have been developing a system for comparing multiple genomes, PLATCOM, where users can choose genomes of their choice freely and perform analysis of the selected genomes with a...
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
ASPLOS
2008
ACM
13 years 10 months ago
General and efficient locking without blocking
Standard concurrency control mechanisms offer a trade-off: Transactional memory approaches maximize concurrency, but suffer high overheads and cost for retrying in the case of act...
Yannis Smaragdakis, Anthony Kay, Reimer Behrends, ...
TON
2012
11 years 11 months ago
A Transport Protocol to Exploit Multipath Diversity in Wireless Networks
Abstract—Wireless networks (including wireless mesh networks) provide opportunities for using multiple paths. Multihoming of hosts, possibly using different technologies and prov...
Vicky Sharma, Koushik Kar, K. K. Ramakrishnan, Shi...
BMCBI
2010
208views more  BMCBI 2010»
13 years 8 months ago
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models
Background: Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure det...
Kasper Stovgaard, Christian Andreetta, Jesper Ferk...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 6 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...