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AOSD
2011
ACM
13 years 1 months ago
Experiences documenting and preserving software constraints using aspects
Software systems are increasingly being built as compositions of reusable artifacts (components, frameworks, toolkits, plug-ins, APIs, etc) that have non-trivial usage constraints...
Roberto Silveira Silva Filho, François Bron...
BMCBI
2010
131views more  BMCBI 2010»
13 years 1 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
BMCBI
2010
185views more  BMCBI 2010»
13 years 1 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
JCC
2011
87views more  JCC 2011»
13 years 1 months ago
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...
Djurre H. De Jong, Lars V. Schäfer, Alex H. D...
TASLP
2011
13 years 1 months ago
A Generative Student Model for Scoring Word Reading Skills
—This paper presents a novel student model intended to automate word-list-based reading assessments in a classroom setting, specifically for a student population that includes b...
Joseph Tepperman, Sungbok Lee, Shrikanth Narayanan...