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BMCBI
2008
141views more  BMCBI 2008»
13 years 7 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
EDBT
2009
ACM
156views Database» more  EDBT 2009»
14 years 2 days ago
Evaluating very large datalog queries on social networks
We consider a near future scenario in which users of a Web 2.0 application, such as a social network, contribute to the application not only data, but also rules which automatical...
Royi Ronen, Oded Shmueli
LBM
2007
13 years 9 months ago
Syntactic Features for Protein-Protein Interaction Extraction
Background: Extracting Protein-Protein Interactions (PPI) from research papers is a way of translating information from English to the language used by the databases that store th...
Rune Sætre, Kenji Sagae, Jun-ichi Tsujii
SIGUCCS
2000
ACM
13 years 11 months ago
Linux and Open Source in the Academic Enterprise
Open Source Software (OSS) has made great strides toward mainstream acceptance over the past two years. However, many IT managers, both in business and academia, are still cautiou...
Mike Davis, Will O'Donovan, John Fritz, Carlisle C...
BMCBI
2010
140views more  BMCBI 2010»
13 years 4 months ago
An improved machine learning protocol for the identification of correct Sequest search results
Background: Mass spectrometry has become a standard method by which the proteomic profile of cell or tissue samples is characterized. To fully take advantage of tandem mass spectr...
Morten Kallberg, Hui Lu