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» Testing the significance of attribute interactions
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BMCBI
2010
109views more  BMCBI 2010»
13 years 9 months ago
Functional characterization and topological modularity of molecular interaction networks
Background: Analyzing interaction networks for functional characterization poses significant challenges arising from the noisy, incomplete, and generic nature of both the interact...
Jayesh Pandey, Mehmet Koyutürk, Ananth Grama
BMCBI
2007
197views more  BMCBI 2007»
13 years 9 months ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
SIGMOD
2008
ACM
95views Database» more  SIGMOD 2008»
14 years 9 months ago
Interactive generation of integrated schemas
Schema integration is the problem of creating a unified target schema based on a set of existing source schemas that relate to each other via specified correspondences. The unifie...
Laura Chiticariu, Phokion G. Kolaitis, Lucian Popa
BMCBI
2010
104views more  BMCBI 2010»
13 years 9 months ago
Bidirectional best hit r-window gene clusters
Background: Conserved gene clusters are groups of genes that are located close to one another in the genomes of several species. They tend to code for proteins that have a functio...
Melvin Zhang, Hon Wai Leong
CIBCB
2007
IEEE
14 years 3 months ago
Spectral Decomposition of Signaling Networks
—Many dynamical processes can be represented as directed attributed graphs or Petri nets where relationships between various entities are explicitly expressed. Signaling networks...
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merri...