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IPPS
2009
IEEE
14 years 2 months ago
Annotation-based empirical performance tuning using Orio
In many scientific applications, significant time is spent tuning codes for a particular highperformance architecture. Tuning approaches range from the relatively nonintrusive (...
Albert Hartono, Boyana Norris, Ponnuswamy Sadayapp...
LREC
2010
246views Education» more  LREC 2010»
13 years 9 months ago
Q-WordNet: Extracting Polarity from WordNet Senses
This paper presents Q-WordNet, a lexical resource consisting of WordNet senses automatically annotated by positive and negative polarity. Polarity classification amounts to decide...
Rodrigo Agerri, Ana García-Serrano
BMCBI
2007
121views more  BMCBI 2007»
13 years 8 months ago
A procedure for identifying homologous alternative splicing events
Background: The study of the functional role of alternative splice isoforms of a gene is a very active area of research in biology. The difficulty of the experimental approach (in...
David Talavera, Adam Hospital, Modesto Orozco, Xav...
BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
Background: Overlapping genes (OGs) in bacterial genomes are pairs of adjacent genes of which the coding sequences overlap partly or entirely. With the rapid accumulation of seque...
Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
BMCBI
2008
140views more  BMCBI 2008»
13 years 8 months ago
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Background: The most renowned biological ontology, Gene Ontology (GO) is widely used for annotations of genes and gene products of different organisms. However, there are shortcom...
Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang,...