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NAR
2008
94views more  NAR 2008»
13 years 8 months ago
The Gene Ontology project in 2008
The Gene Ontology (GO) project (http://www.gene ontology.org/) provides a set of structured, controlled vocabularies for community use in annotating genes, gene products and seque...
CAISE
2000
Springer
14 years 14 days ago
An Overview of RoZ: A Tool for Integrating UML and Z Specifications
This paper presents an approach and a tool to increase specification quality by using a combination of UML and formal languages. Our approach is based on the expression of the UML ...
Sophie Dupuy, Yves Ledru, Monique Chabre-Peccoud
BMCBI
2007
133views more  BMCBI 2007»
13 years 8 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
NAR
2006
120views more  NAR 2006»
13 years 8 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
EDBT
2008
ACM
166views Database» more  EDBT 2008»
14 years 8 months ago
OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics
By comparing genomes among both closely and distally related species, comparative genomics analysis characterizes structures and functions of different genomes in both conserved a...
Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wan...