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ENVSOFT
2008
120views more  ENVSOFT 2008»
13 years 7 months ago
Extension and evaluation of sensitivity analysis capabilities in a photochemical model
The decoupled direct method in three dimensions (DDM-3D) provides an efficient and accurate approach for probing the sensitivity of atmospheric pollutant concentrations to various...
S. L. Napelenok, D. S. Cohan, M. T. Odman, S. Tons...
BMCBI
2010
259views more  BMCBI 2010»
13 years 2 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
JCC
2007
69views more  JCC 2007»
13 years 7 months ago
Discrimination of dynamical system models for biological and chemical processes
In technical chemistry, systems biology and biotechnology, the construction of predictive models has become an essential step in process design and product optimization. Accurate ...
Sönke Lorenz, Elmar Diederichs, Regina Telgma...
BIOCOMP
2007
13 years 9 months ago
Interaction Models for Biochemical Reactions
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru