For complex data mining queries, query optimization issues arise, similar to those for the traditional database queries. However, few works have applied the cost-based query optim...
Modular structure is ubiquitous in real-world complex networks. The detection of this type of organization into modules gives insights in the relationship between topological stru...
We consider the multiplication of a sparse N × N matrix A with a dense N × N matrix B in the I/O model. We determine the worst-case non-uniform complexity of this task up to a c...
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
: Clustering protein-protein interaction networks (PINs) helps to identify complexes that guide the cell machinery. Clustering algorithms often create a flat clustering, without co...
Bill Andreopoulos, Aijun An, Xiangji Huang, Xiaoga...