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» The Complexity of Phrase Alignment Problems
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BMCBI
2008
109views more  BMCBI 2008»
13 years 11 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
BMCBI
2008
83views more  BMCBI 2008»
13 years 11 months ago
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
Akito Taneda
FOCS
2004
IEEE
14 years 2 months ago
Hardness of Approximating the Shortest Vector Problem in Lattices
Let p > 1 be any fixed real. We show that assuming NP RP, there is no polynomial time algorithm that approximates the Shortest Vector Problem (SVP) in p norm within a constant ...
Subhash Khot
IPM
2002
102views more  IPM 2002»
13 years 10 months ago
Problems of music information retrieval in the real world
Although a substantial number of research projects have addressed music information retrieval over the past three decades, the field is still very immature. Few of these projects ...
Donald Byrd, Tim Crawford
ICDM
2008
IEEE
106views Data Mining» more  ICDM 2008»
14 years 5 months ago
Boosting Relational Sequence Alignments
The task of aligning sequences arises in many applications. Classical dynamic programming approaches require the explicit state enumeration in the reward model. This is often impr...
Andreas Karwath, Kristian Kersting, Niels Landwehr