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BMCBI
2005
125views more  BMCBI 2005»
13 years 8 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
BMCBI
2005
117views more  BMCBI 2005»
13 years 8 months ago
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Background: The Gene Ontology Annotation (GOA) database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase....
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian...
AICOM
2004
118views more  AICOM 2004»
13 years 8 months ago
Qualitative pattern matching with linguistic terms
Abstract. In the framework of possibility theory, a tool named `fuzzy pattern matching' (FPM) has been proposed in the eighties and since successfully used in flexible queryin...
Yannick Loiseau, Henri Prade, Mohand Boughanem
ALGORITHMICA
2002
103views more  ALGORITHMICA 2002»
13 years 8 months ago
Efficient Bulk Operations on Dynamic R-Trees
In recent years there has been an upsurge of interest in spatial databases. A major issue is how to manipulate efficiently massive amounts of spatial data stored on disk in multidi...
Lars Arge, Klaus Hinrichs, Jan Vahrenhold, Jeffrey...
BMCBI
2002
120views more  BMCBI 2002»
13 years 8 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
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