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ENTCS
2006
97views more  ENTCS 2006»
13 years 10 months ago
VyrdMC: Driving Runtime Refinement Checking with Model Checkers
This paper presents VyrdMC, a runtime verification tool we are building for concurrent software components. The correctness criterion checked by VyrdMC is refinement: Each executi...
Tayfun Elmas, Serdar Tasiran
ENTCS
2006
146views more  ENTCS 2006»
13 years 10 months ago
Relating State-Based and Process-Based Concurrency through Linear Logic
This paper has the purpose of reviewing some of the established relationships between logic and concurrency, and of exploring new ones. Concurrent and distributed systems are noto...
Iliano Cervesato, Andre Scedrov
BMCBI
2007
113views more  BMCBI 2007»
13 years 10 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
BMCBI
2007
116views more  BMCBI 2007»
13 years 10 months ago
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases
Background: The pyridine nucleotide disulfide reductase (PNDR) is a large and heterogeneous protein family divided into two classes (I and II), which reflect the divergent evoluti...
César L. Avila, Viviana A. Rapisarda, Ricar...
BMCBI
2007
148views more  BMCBI 2007»
13 years 10 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...