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» The Distribution of Genomic Distance between Random Genomes
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BMCBI
2007
163views more  BMCBI 2007»
13 years 7 months ago
Strainer: software for analysis of population variation in community genomic datasets
Background: Metagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will...
John M. Eppley, Gene W. Tyson, Wayne M. Getz, Jill...
BMCBI
2004
148views more  BMCBI 2004»
13 years 7 months ago
Bioinformatics analysis of SARS coronavirus genome polymorphism
Background: We have compared 38 isolates of the SARS-CoV complete genome. The main goal was twofold: first, to analyze and compare nucleotide sequences and to identify positions o...
Gordana Pavlovic-Lazetic, Nenad S. Mitic, Milos V....
BIBM
2008
IEEE
106views Bioinformatics» more  BIBM 2008»
13 years 9 months ago
Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques
The evolutionary histories of viral genomes have received significant recent attention due to their importance in understanding virulence and the corresponding ramifications to pu...
Niranjan Nagarajan, Carl Kingsford
BMCBI
2010
96views more  BMCBI 2010»
13 years 7 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
IPPS
2003
IEEE
14 years 1 months ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín