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» The Equivalence between Biology and Computation
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CVPR
2012
IEEE
12 years 6 days ago
Supervised hashing with kernels
Recent years have witnessed the growing popularity of hashing in large-scale vision problems. It has been shown that the hashing quality could be boosted by leveraging supervised ...
Wei Liu, Jun Wang, Rongrong Ji, Yu-Gang Jiang, Shi...
SODA
2010
ACM
213views Algorithms» more  SODA 2010»
14 years 7 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
BMCBI
2007
136views more  BMCBI 2007»
13 years 10 months ago
Genomorama: genome visualization and analysis
Background: The ability to visualize genomic features and design experimental assays that can target specific regions of a genome is essential for modern biology. To assist in the...
Jason D. Gans, Murray Wolinsky
BMCBI
2008
211views more  BMCBI 2008»
13 years 10 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
KDD
2008
ACM
181views Data Mining» more  KDD 2008»
14 years 10 months ago
Fastanova: an efficient algorithm for genome-wide association study
Studying the association between quantitative phenotype (such as height or weight) and single nucleotide polymorphisms (SNPs) is an important problem in biology. To understand und...
Xiang Zhang, Fei Zou, Wei Wang 0010