Background: Recent advances in molecular biology techniques provide an opportunity for developing detailed mathematical models of biological processes. An iterative scheme is intr...
Kapil G. Gadkar, Rudiyanto Gunawan, Francis J. Doy...
We present a software package for the simulation of very large neuronal networks on parallel computers. The package can be run on any system with an implementation of the Message ...
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
In this paper, we propose a model for representing and predicting distances in large-scale networks by matrix factorization. The model is useful for network distance sensitive app...
We present Variable Influence Structure Analysis, or VISA, an algorithm that performs hierarchical decomposition of factored Markov decision processes. VISA uses a dynamic Bayesia...