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» The Factor Graph Network Model for Biological Systems
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BMCBI
2005
98views more  BMCBI 2005»
13 years 8 months ago
Iterative approach to model identification of biological networks
Background: Recent advances in molecular biology techniques provide an opportunity for developing detailed mathematical models of biological processes. An iterative scheme is intr...
Kapil G. Gadkar, Rudiyanto Gunawan, Francis J. Doy...
IJON
2000
69views more  IJON 2000»
13 years 8 months ago
PARALLEL NEUROSYS: A system for the simulation of very large networks of biologically accurate neurons on parallel computers
We present a software package for the simulation of very large neuronal networks on parallel computers. The package can be run on any system with an implementation of the Message ...
Peter Pacheco, Marcelo Camperi, Toshi Uchino
TCS
2011
13 years 3 months ago
Parameter estimation for Boolean models of biological networks
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Elena S. Dimitrova, Luis David García-Puent...
IMC
2004
ACM
14 years 2 months ago
Modeling distances in large-scale networks by matrix factorization
In this paper, we propose a model for representing and predicting distances in large-scale networks by matrix factorization. The model is useful for network distance sensitive app...
Yun Mao, Lawrence K. Saul
JMLR
2006
190views more  JMLR 2006»
13 years 8 months ago
Causal Graph Based Decomposition of Factored MDPs
We present Variable Influence Structure Analysis, or VISA, an algorithm that performs hierarchical decomposition of factored Markov decision processes. VISA uses a dynamic Bayesia...
Anders Jonsson, Andrew G. Barto