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» The Factor Graph Network Model for Biological Systems
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RECOMB
2004
Springer
14 years 9 months ago
Learning Regulatory Network Models that Represent Regulator States and Roles
Abstract. We present an approach to inferring probabilistic models of generegulatory networks that is intended to provide a more mechanistic representation of transcriptional regul...
Keith Noto, Mark Craven
KDD
2009
ACM
172views Data Mining» more  KDD 2009»
14 years 1 months ago
Learning dynamic temporal graphs for oil-production equipment monitoring system
Learning temporal graph structures from time series data reveals important dependency relationships between current observations and histories. Most previous work focuses on learn...
Yan Liu, Jayant R. Kalagnanam, Oivind Johnsen
GCB
2009
Springer
154views Biometrics» more  GCB 2009»
14 years 16 days ago
Comparative Identification of Differential Interactions from Trajectories of Dynamic Biological Networks
Abstract: It is often challenging to reconstruct accurately a complete dynamic biological network due to the scarcity of data collected in cost-effective experiments. This paper ad...
Zhengyu Ouyang, Mingzhou Song
KDD
2005
ACM
127views Data Mining» more  KDD 2005»
14 years 2 months ago
Mining closed relational graphs with connectivity constraints
Relational graphs are widely used in modeling large scale networks such as biological networks and social networks. In this kind of graph, connectivity becomes critical in identif...
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han
CMSB
2009
Springer
14 years 18 days ago
On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle
Abstract. In systems biology, the number of models of cellular processes increases rapidly, but re-using models in different contexts or for different questions remains a challengi...
Elisabetta De Maria, François Fages, Sylvai...