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» The Factor Graph Network Model for Biological Systems
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BMCBI
2010
90views more  BMCBI 2010»
13 years 8 months ago
PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
Background: Some of the recent investigations in systems biology have revealed the existence of a complex regulatory network between genes, microRNAs (miRNAs) and transcription fa...
Sanghamitra Bandyopadhyay, Malay Bhattacharyya
RECOMB
2005
Springer
14 years 9 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
NAR
2006
98views more  NAR 2006»
13 years 8 months ago
oGNM: online computation of structural dynamics using the Gaussian Network Model
An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towar...
Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher ...
CN
2008
98views more  CN 2008»
13 years 8 months ago
Description and simulation of dynamic mobility networks
During the last decade, the study of large scale complex networks has attracted a substantial amount of attention and works from several domains: sociology, biology, computer scie...
Antoine Scherrer, Pierre Borgnat, Eric Fleury, Jea...
P2P
2005
IEEE
137views Communications» more  P2P 2005»
14 years 2 months ago
The Essence of P2P: A Reference Architecture for Overlay Networks
The success of the P2P idea has created a huge diversity of approaches, among which overlay networks, for example, Gnutella, Kazaa, Chord, Pastry, Tapestry, P-Grid, or DKS, have r...
Karl Aberer, Luc Onana Alima, Ali Ghodsi, Sarunas ...